BtaEX6039606 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000329 | MEGF10
Description
Bos taurus multiple EGF-like-domains 10 (MEGF10), mRNA. [Source:RefSeq mRNA;Acc:NM_001046451]
Coordinates
chr7:27876052-27882331:-
Coord C1 exon
chr7:27882085-27882331
Coord A exon
chr7:27880135-27880255
Coord C2 exon
chr7:27876052-27876188
Length
121 bp
Sequences
Splice sites
3' ss Seq
GTCACATGTTAATCCCTCAGCTG
3' ss Score
5.38
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
CCTGCGACGGTGATCACTGGGGACCTCACTGCAGCAGCCGGTGCCAGTGCAAAAATGGGGCACTGTGCAACCCCATCACAGGGGCTTGCCACTGCGCTGCGGGCTTCCGGGGCTGGCGCTGTGAGGAGCGCTGTGAGCAGGGCACCTACGGTAATGATTGTCACCAGAGATGCCAGTGCCAGAATGGAGCAACCTGCGATCATGTCACGGGGGAGTGCCGCTGCCCACCTGGATACACTGGAGCCTT
Seq A exon
CTGTGAGGATCTTTGTCCCCCTGGCAAGCATGGACCACAGTGTGAGCAGAGATGCCCCTGCCAGAACGGAGGCGTATGTCATCACGTCACTGGAGAGTGCTCTTGTCCTCCTGGTTGGCTG
Seq C2 exon
GGCACAGTGTGTGGTCAGCCTTGCCCCGAGGGTCGCTTTGGAAAGAACTGTTCGCAAGAATGTCAGTGCCATAATGGAGGGACCTGCGATGCTGCCACAGGCCAATGTCACTGCAGTCCCGGCTACACAGGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000329-'9-7,'9-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=PU(84.6=13.3)
A:
PF126612=hEGF=PD(7.7=2.4)
C2:
PF079748=EGF_2=PU(93.5=63.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTGCAACCCCATCACAG
R:
TGGCACTGACATTCTTGCGAA
Band lengths:
258-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]