RnoEX0053761 @ rn6
Exon Skipping
Gene
ENSRNOG00000013674 | Megf10
Description
multiple EGF-like domains 10 [Source:RGD Symbol;Acc:735084]
Coordinates
chr18:52305466-52311248:+
Coord C1 exon
chr18:52305466-52305712
Coord A exon
chr18:52307456-52307576
Coord C2 exon
chr18:52311112-52311248
Length
121 bp
Sequences
Splice sites
3' ss Seq
GTTTCACTTAAATCCCTCAGCTG
3' ss Score
4.1
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CTTGTGACGGTGATCACTGGGGACCTCACTGCAGCAGCCGGTGTCAGTGCAAAAACAGAGCTTTGTGTAACCCCATCACCGGAGCTTGTCACTGCGCCGCGGGCTACCGGGGATGGCGCTGTGAGGACCGTTGTGAACAGGGCACCTACGGTAACGACTGTCATCAAAGGTGCCAGTGTCAGAATGGAGCGACCTGTGACCACATCACTGGGGAATGTCGTTGTTCACCTGGATACACTGGAGCCTT
Seq A exon
CTGTGAGGATCTGTGTCCTCCTGGCAAACATGGCCCACAGTGTGAGCAGAGATGTCCCTGCCAAAATGGAGGCGTGTGCCATCATGTCACTGGAGAGTGCTCCTGCCCTTCTGGCTGGATG
Seq C2 exon
GGCACAGTGTGTGGTCAGCCCTGCCCCGAGGGTCGCTTTGGAAAGAACTGTTCCCAAGAATGTCAGTGCCACAATGGAGGAGCGTGTGATGCTGCCACAGGCCAATGTCACTGCAGCCCAGGATACACAGGGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013674-'11-8,'11-7,12-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=55.4),PF126612=hEGF=PU(84.6=13.3)
A:
PF126612=hEGF=PD(7.7=2.4)
C2:
PF0005319=Laminin_EGF=PU(54.3=54.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACCGGAGCTTGTCACTG
R:
CTCCTCCATTGTGGCACTGAC
Band lengths:
256-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]