GgaEX6050654 @ galGal3
Exon Skipping
Gene
ENSGALG00000014699 | MEGF10
Description
NA
Coordinates
chrZ:55270176-55272696:+
Coord C1 exon
chrZ:55270176-55270422
Coord A exon
chrZ:55270711-55270831
Coord C2 exon
chrZ:55272554-55272696
Length
121 bp
Sequences
Splice sites
3' ss Seq
GCTGTGTACCACCTCTGCAGCTG
3' ss Score
7.21
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
Exon sequences
Seq C1 exon
CCTGCGACAGTGACCACTGGGGACCTCACTGCAGCAGCCGCTGTCAGTGCAAAAACGGAGCCCTGTGCAACCCCATCACTGGTGCCTGCCACTGTGCGTCTGGTTTCAAAGGGTGGCGCTGCGAGGAGCGCTGTGACCAAGGGACATATGGAAATGACTGCCATCAGAAATGTCAGTGTCAGAATGGAGCCACCTGTGACCACGTGACTGGAGAGTGCAGATGTCCTCCTGGATATACCGGAGCCTT
Seq A exon
CTGTGAGGATCTCTGCCCCCCGGGGAAGCACGGGCCGCAGTGTGAGGAGAGATGCCCCTGCCAGAATGGAGGCATCTGCCACCACGTGACCGGGGAGTGTGCATGCCCACCAGGATGGATG
Seq C2 exon
ACACAGGGCATGGTCTGTGGTCAGCCTTGTCCTGAAGGTCGTTATGGGAATAACTGTTCCCAGGAGTGTCAGTGCCACAATGGAGGGATCTGCGACTCAGCGACAGGTCAATGCCATTGCAGCCCAGGCTATACAGGAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014699-'4-6,'4-5,5-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=PU(84.6=13.3)
A:
PF126612=hEGF=PD(7.7=2.4)
C2:
PF0005319=Laminin_EGF=PU(54.3=52.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTGTGCGTCTGGTTTCAA
R:
GATCCCTCCATTGTGGCACTG
Band lengths:
249-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]