GgaEX7011627 @ galGal4
Exon Skipping
Gene
ENSGALG00000028622 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
Coordinates
chr25:408912-409559:-
Coord C1 exon
chr25:409313-409559
Coord A exon
chr25:409125-409239
Coord C2 exon
chr25:408912-409048
Length
115 bp
Sequences
Splice sites
3' ss Seq
ACTGCTCGCTTTCCCCGCAGCTG
3' ss Score
11.96
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
CGTGTGATGAGCGTTTGTGGGGCAAGAACTGCGAGCACCACTGTGACTGCCACCACGGGGCCCCCTGCAATCCCCTGAGTGGGGTCTGTGCCTGCCCCCCTGGCTTCACCCCCCCACTGTGCCACCAGCCCTGCCCGCCCGGCTCCTACGGCCCCGACTGCCGCCTGCACTGCCCATGCCACCACGGGGCCCCCTGCAACGCCTCCACTGGTGCCTGCCTCTGCCCCCCAGGACTTGCTGGCCCACT
Seq A exon
CTGTGAGGTGCTGTGCCCCGAGGGGACACCGTGCGGCACCCACTGCCCCTGCCAGAATGGGGGTATCTGCCACCCCCCCGGCTCCAGCACCTGCGTCTGCCCCCATGGATGGATG
Seq C2 exon
GGGGACATCTGCTCCATACCGTGCCCCCCCGGGCGCTTCGGCCCCAGCTGCCAGGGGGAGTGCCGCTGCCACAACGGGGGTCGCTGTGATCCCCTGGGGGGGCAGTGCCGGTGTGCGCCCGGCTTCACCGGAGAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028622-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(70.7=34.9)
A:
PF0005319=Laminin_EGF=PD(26.8=28.2)
C2:
PF126612=hEGF=PU(84.6=23.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAACTGCGAGCACCACTG
R:
GCACGGTATGGAGCAGATGTC
Band lengths:
249-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]