DreEX6043762 @ danRer10
Exon Skipping
Gene
ENSDARG00000098233 | TIAM2 (2 of 2)
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
Coordinates
chr20:4587328-4589458:+
Coord C1 exon
chr20:4587328-4587406
Coord A exon
chr20:4589063-4589152
Coord C2 exon
chr20:4589240-4589458
Length
90 bp
Sequences
Splice sites
3' ss Seq
AATGTAATGTCTCTCTGCAGGTT
3' ss Score
11.1
5' ss Seq
ACGGTAACA
5' ss Score
6.72
Exon sequences
Seq C1 exon
GTCTATGATGAACTCGAAGTGTGGCCGATCAATGTGTTGAGCTTAACCATGTCCCGTCCAGACGCAACCATAGACTTTG
Seq A exon
GTTTTGCAGTCACAGGCCACGTCGATGGTTCCAGGAGAACTCATGTCTATGTGAGTGAAGTGAAACCTGAAGGCCTGGCATATATTCACG
Seq C2 exon
GTCTGAGAGCTGGAGATGAGATCTTGACTCTTAATGGCGTGAGTGTGACGTCTCTGGATCTAGGTCTCATGCAGAGCTTCTTCAGTCAGCAAGAGCTCAATCTCGTGCTCAGACGCGAGGAAAACAGTCCAGACCAGCAGAGCTCTGTCTGGCCCGACTGTGAACCTGATCAAGCCCAGCATCCTCACACAGACATTCACCTGGAGCAGCTGAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098233-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.032 C2=0.500
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(16.2=48.1)
A:
PF0059519=PDZ=FE(37.5=100)
C2:
PF0059519=PDZ=PD(45.0=48.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTAACCATGTCCCGTCCAG
R:
GGTCTGGACTGTTTTCCTCGC
Band lengths:
174-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]