RnoEX0090580 @ rn6
Exon Skipping
Gene
ENSRNOG00000016728 | Tiam2
Description
T-cell lymphoma invasion and metastasis 2 [Source:RGD Symbol;Acc:2324148]
Coordinates
chr1:44368998-44372134:+
Coord C1 exon
chr1:44368998-44369076
Coord A exon
chr1:44371076-44371168
Coord C2 exon
chr1:44371871-44372134
Length
93 bp
Sequences
Splice sites
3' ss Seq
GGTGTTATTTTCTCCCCCAGGGT
3' ss Score
9.67
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GTTTATGATGAAATTGAAGTCTTCCCACTCAGTGTGTATGACGTGCAGCTAACCAAGACGGGGGACATGACTGACTTTG
Seq A exon
GGTTTGCAGTCACAGCCCAGGTGGACGAGCACCAGCATCTCAGCCGGATATTTATCAGCGATGTTCTCCCTGACAGCCTGGCGTATGGAGGAG
Seq C2 exon
GACTGAGAAAGGGCAATGAAATCAGGAGCTTAAATGGGGAAGCAGTGTCTGACCTTGACCTCAAGCAGATGGAGGCTTTGTTTTCTGAGAAGAGCGTTGGACTCACTCTAGTCGCCCGGCCTGCAGACACAAGAGCAAGCCTGTGTACTTCCTGCTCAGACAGTGACCTGTTCTCCAGGGACCAGAAAAGTCTGCTGCCCTCTCCCAACCAGTGCCAACTGCTGGAGGAATTCCTGGATAACTTTAAAAAAACCTCCACAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016728-'18-16,'18-15,19-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(15.5=48.1)
A:
PF0059519=PDZ=FE(36.9=100)
C2:
PF0059519=PDZ=PD(46.4=43.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGGACATGACTGACTTTG
R:
ACACAGGCTTGCTCTTGTGTC
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]