Special

GgaEX6030706 @ galGal3

Exon Skipping

Gene
Description
NA
Coordinates
chr3:52444407-52446820:+
Coord C1 exon
chr3:52444407-52444485
Coord A exon
chr3:52445443-52445535
Coord C2 exon
chr3:52446557-52446820
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTAAACCTGTTTTACTTCAGGTT
3' ss Score
9.35
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGTATGATGAAATAGAAATCTGCCCATTAAATGTTTATCACATTCATCTTACAAAGACTGAAAATATAACAGATTTTG
Seq A exon
GTTTTGCTGTCACAGCTCAAGTTGATGAAAATCAGCATCTCACACACATATTTGTAAGTGATGTTCTTCCTGATGGGCTTGCATACAGGGAAG
Seq C2 exon
GGCTACGAGTAGGCAATGAGATCCTGAGCATAAATGGAGAGTCTGTGTCTGATCTTGACCTCAGGCAGATGGAGCTATTGTTTTCAGAGAGAAGCGTAATGCTCACTTTGAGAATGAGCCACTGTGGGAATCAGCAACCCTTGTGTGCATCCTGGTCATCAGATGGTGACATTTCCAGGGTTCCAAAAAGTTTGTTGCCGCCTCCAAACCAGTCACAGCTCCTGGAAGAGTTTTTAGATAACTTCAGAAAAAACACAGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013645-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.247
Domain overlap (PFAM):

C1:
PF0059519=PDZ=PU(14.8=44.4)
A:
PF0059519=PDZ=FE(38.3=100)
C2:
PF0059519=PDZ=PD(45.7=41.6)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACATTCATCTTACAAAGACTGAAA
R:
TCCCACAGTGGCTCATTCTCA
Band lengths:
170-263
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]