Special

BtaEX0036425 @ bosTau6

Exon Skipping

Gene
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
Coordinates
chr9:93172296-93175970:+
Coord C1 exon
chr9:93172296-93172374
Coord A exon
chr9:93175036-93175128
Coord C2 exon
chr9:93175707-93175970
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCTTTTATTTTTCTTCCTAGGGT
3' ss Score
11.23
5' ss Seq
AAGGTCCGT
5' ss Score
6.16
Exon sequences
Seq C1 exon
GTTTATGATGAGATAGAAGTCTTTCCACTAAGCGTGTATGATGTGCAGCTGACAAAGACCGGGGGTGTGTCTGACTTCG
Seq A exon
GGTTTGCAGTGACTGCTCAGGTGGACGAGCACCAGCATCTCAGCCGCATCTTTATAAGTGACGTCCTCCCTGACGGCCTGGCGTATGGGGAAG
Seq C2 exon
GGTTGAGAAAGGGCAATGAAATCATGACCTTAAATGGGGAAGCCGTGTCTGATCTTGACCTCAAGCAGATGGAGGCTCTGTTTTCTGAGAAGAGTGTCGGGCTCACTCTGATTGCCAGGCCACCAGACACAAAAGCGACTCTGTGTTCTTCCTGGTCAGACAGTGACCTGTTCTCCCGGGACCAGAAGGGTCTGCTGCCCCCTCCTAACCAGTCCCAACTTCTGGAGGAATTCCTGGATCACTTTAAAAAGGATACGGCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010047-'15-14,'15-13,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.191
Domain overlap (PFAM):

C1:
PF0059519=PDZ=PU(15.7=48.1)
A:
PF0059519=PDZ=FE(37.3=100)
C2:
PF0059519=PDZ=PD(45.8=42.7)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGCAGCTGACAAAGACCG
R:
AGTCGCTTTTGTGTCTGGTGG
Band lengths:
179-272
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development