BtaEX0036425 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010047 | TIAM2
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
Coordinates
chr9:93172296-93175970:+
Coord C1 exon
chr9:93172296-93172374
Coord A exon
chr9:93175036-93175128
Coord C2 exon
chr9:93175707-93175970
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCTTTTATTTTTCTTCCTAGGGT
3' ss Score
11.23
5' ss Seq
AAGGTCCGT
5' ss Score
6.16
Exon sequences
Seq C1 exon
GTTTATGATGAGATAGAAGTCTTTCCACTAAGCGTGTATGATGTGCAGCTGACAAAGACCGGGGGTGTGTCTGACTTCG
Seq A exon
GGTTTGCAGTGACTGCTCAGGTGGACGAGCACCAGCATCTCAGCCGCATCTTTATAAGTGACGTCCTCCCTGACGGCCTGGCGTATGGGGAAG
Seq C2 exon
GGTTGAGAAAGGGCAATGAAATCATGACCTTAAATGGGGAAGCCGTGTCTGATCTTGACCTCAAGCAGATGGAGGCTCTGTTTTCTGAGAAGAGTGTCGGGCTCACTCTGATTGCCAGGCCACCAGACACAAAAGCGACTCTGTGTTCTTCCTGGTCAGACAGTGACCTGTTCTCCCGGGACCAGAAGGGTCTGCTGCCCCCTCCTAACCAGTCCCAACTTCTGGAGGAATTCCTGGATCACTTTAAAAAGGATACGGCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010047-'15-14,'15-13,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.191
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(15.7=48.1)
A:
PF0059519=PDZ=FE(37.3=100)
C2:
PF0059519=PDZ=PD(45.8=42.7)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGCAGCTGACAAAGACCG
R:
AGTCGCTTTTGTGTCTGGTGG
Band lengths:
179-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development