DreEX0078849 @ danRer10
Exon Skipping
Gene
ENSDARG00000087780 | tiam2a
Description
T-cell lymphoma invasion and metastasis 2a [Source:ZFIN;Acc:ZDB-GENE-030219-98]
Coordinates
chr17:49049088-49054403:+
Coord C1 exon
chr17:49049088-49049166
Coord A exon
chr17:49049287-49049376
Coord C2 exon
chr17:49054191-49054403
Length
90 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTCTCCTCAAGGCT
3' ss Score
8.89
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CCATATGACGAATTGGAAGTTAGCCAGCTGCAAGTCTACACTCTGCACATGTCTAGACCCAGTCTAACTGGAGACTTTG
Seq A exon
GCTTTGCTGTTACAGGCTATGTAGACAGCCTCAAAAACAGCCATATCATTGTCAGCGAAGTTCTCCCTGATGGGCTCGCTTTCAGCAAAG
Seq C2 exon
GTCTTAGGCCTGGTGATGAGATCGTGGTTCTGAACGGTTGTGAGGTGTCTTCTCTGGACCTGACTCTCATACAGACTTTATTTAATGAGCAGAATCTGCAGCTGACTGCGAAACGTCACCTGCCCTCCATTCCACATGATTCAGACACAGCAAACGTGCAGTCCCCGTACAGAGATATCCATCAAAACCGCCAGAGAGCCAAGTCCTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087780-'14-17,'14-16,15-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.421
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(16.0=48.1)
A:
PF0059519=PDZ=FE(37.0=100)
C2:
PF0059519=PDZ=PD(45.7=51.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCTGCAAGTCTACACTC
R:
CAGGTGACGTTTCGCAGTCAG
Band lengths:
179-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]