HsaEX0064960 @ hg19
Exon Skipping
Gene
ENSG00000146426 | TIAM2
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:11806]
Coordinates
chr6:155500512-155504634:+
Coord C1 exon
chr6:155500512-155500590
Coord A exon
chr6:155503360-155503452
Coord C2 exon
chr6:155504371-155504634
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCTTTTGTTTTCATTCCTAGGGT
3' ss Score
11.4
5' ss Seq
AAGGTCCGT
5' ss Score
6.16
Exon sequences
Seq C1 exon
GTTTATGATGAAATAGAAGTCTTTCCACTAAATGTTTATGACGTGCAGCTCACGAAGACTGGGAGTGTGTGTGACTTTG
Seq A exon
GGTTTGCAGTTACAGCGCAGGTGGATGAGCGTCAGCATCTCAGCCGGATATTTATAAGCGACGTTCTTCCCGATGGCCTGGCGTATGGGGAAG
Seq C2 exon
GGCTGAGAAAGGGCAATGAGATCATGACCTTAAATGGGGAAGCTGTGTCTGATCTTGACCTTAAGCAGATGGAGGCCCTGTTTTCTGAGAAGAGCGTCGGACTCACTCTGATTGCCCGGCCTCCGGACACAAAAGCAACCCTGTGTACATCCTGGTCAGACAGTGACCTGTTCTCCAGGGACCAGAAGAGTCTGCTGCCCCCTCCTAACCAGTCCCAACTGCTGGAGGAATTCCTGGATAACTTTAAAAAGAATACAGCCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146426-'13-16,'13-15,14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.180
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(15.7=48.1)
A:
PF0059519=PDZ=FE(37.3=100)
C2:
PF0059519=PDZ=PD(45.8=42.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGACTGGGAGTGTGTGTG
R:
CCAGGATGTACACAGGGTTGC
Band lengths:
182-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)