MmuEX6074979 @ mm10
Exon Skipping
Gene
ENSMUSG00000023800 | Tiam2
Description
T cell lymphoma invasion and metastasis 2 [Source:MGI Symbol;Acc:MGI:1344338]
Coordinates
chr17:3450779-3454351:+
Coord C1 exon
chr17:3450779-3450857
Coord A exon
chr17:3453320-3453412
Coord C2 exon
chr17:3454088-3454351
Length
93 bp
Sequences
Splice sites
3' ss Seq
ATCATTATTTTCTCCCTCAGGGT
3' ss Score
10.41
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GTTTATGATGAAATCGAAGTTTTCCCACTCAGTGTGTATGACGTGCAGCTAACCAAGACTGGGGACATGACTGACTTTG
Seq A exon
GGTTTGCAGTCACAGTTCAGGTGGACGAACACCAGCATCTCAACCGGATATTTATCAGTGATGTTCTCCCTGACAGCCTGGCATACGGAGGAG
Seq C2 exon
GGCTGAGAAAGGGCAACGAAATCACAAGCTTAAATGGGGAACCAGTGTCTGACCTTGACATCCAGCAGATGGAGGCTTTGTTTTCTGAGAAGAGCGTTGGCCTCACTCTAGTCGCCCGGCCTGTGACCACAAGACGAACCCTGTGTGCTTCCTGGTCAGACAGTGACCTGTTCTCCAGGGACCAGAAAAGTCTGCCGCCCTCTCCCAACCAGTCCCAGCTGCTGGAGGAATTCCTGGATAACTTTAGAAAAACCGCCACGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023800-'31-26,'31-25,35-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.251
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(15.7=48.1)
A:
PF0059519=PDZ=FE(37.3=100)
C2:
PF0059519=PDZ=PD(45.8=42.7)
Main Skipping Isoform:
ENSMUST00000072156fB18206
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGCAGCTAACCAAGACTG
R:
GGTTCGTCTTGTGGTCACAGG
Band lengths:
179-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types