DreEX6044381 @ danRer10
Exon Skipping
Gene
ENSDARG00000019383 | cdc42bpb
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:ZFIN;Acc:ZDB-GENE-030131-3647]
Coordinates
chr20:18510176-18514825:-
Coord C1 exon
chr20:18514229-18514825
Coord A exon
chr20:18510342-18510439
Coord C2 exon
chr20:18510176-18510260
Length
98 bp
Sequences
Splice sites
3' ss Seq
TCCACATGCATTGTTTTCAGGCT
3' ss Score
7.71
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CCATTTATACCCCTGGGCGGCACTAGAGGGCGCTGAAGGGGGTTTCGATGCCAAGCTGACAGATACGAGAGGCTGCCAGGCCATGACCATCGGTAACCTCCGCCCTGGCGGTCCAGCGTGTCTCTTTGCAGGCGTGAAGCGGCAGGTTTTCTGTTATGAAATCACACGAGCGAAACCCCATCATCGCAAACTCTGGGAAGTGCAGGCGCCAGGGGTCGTCCAATGGCTGGGGATAATTCGAGAACGGATCTGCGTAGGTTACCCATCAGGCTTTGCTCTGCTGGCCATGCAGGGAGAATCGTCGCCGGTCAGTCTGGTGAGCCCAGGTGACCCCTCGCTGGCATTTTTGGCCCAGCAGCCTCTGGATGCACTTCATGCTATGGAAGTGGGGTCCAATGAGCTGCTGCTGTGCTTCAGTCAGCTGGGAGTGTACGTGGACGCGACTGGAAGACGATCACGAACTCAGGAGCTCATGTGGCCCTCCACACCGCTCGCCTGCA
Seq A exon
GCTCAAACTCGAACTGCCTGACGGTGTACAGCGATTATGGGGTCGACGTGTTTGATGTTCACACTATGGAATGGGTTCAGACCATCTCATTAAGAAAA
Seq C2 exon
ATTCGACCTCTGAATGTGGAAGGCAGTCTAAACCTTTTGAGCATTGAGCAACCCCATCTCATCTATTTCAGCAACAACTCCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019383-'37-41,'37-40,39-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(74.8=100)
A:
PF0078017=CNH=FE(12.0=100)
C2:
PF0078017=CNH=PD(2.6=24.1)
Main Skipping Isoform:
ENSDART00000049437fB1799
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGGGGTCCAATGAGCTG
R:
GATGGGGTTGCTCAATGCTCA
Band lengths:
176-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]