RnoEX6029851 @ rn6
Exon Skipping
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135751970-135755421:-
Coord C1 exon
chr6:135754822-135755421
Coord A exon
chr6:135752150-135752247
Coord C2 exon
chr6:135751970-135752054
Length
98 bp
Sequences
Splice sites
3' ss Seq
GCTCTGCTTCCTCGCACCAGGTT
3' ss Score
7.82
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
CCTCTACCCCTGGACCTCCTTCGATGGAGCAGAAGCTAGCAACTTTGACATCAAGCTCCCAGAAACGAAGGGCTGCCAGCTCATAGCAACAGGGACGCTGAGGAAGAGCTCGTCCACCTGCCTGTTTGTCGCCGTGAAGCGGCTGGTCCTTTGCTACGAGATCCAGAGAACTAAGCCTTTCCACCGGAAGTTCAATGAGATCGTGGCCCCGGGACATGTGCAGTGGATGGCCATGTTCAAGGACAGGCTCTGTGTTGGCTACCCCTCCGGGTTCTCTCTGTTGAGCATCCAGGGGGACGGGCAGCCTCTAGACCTGGTAAATCCCGCTGACCCCTCGCTCGCGTTCCTCTCACAGCAGTCTTTCGATGCCCTCTGTGCTGTAGAGCTCAAAAGTGAGGAGTACCTGCTCTGCTTCAGCCACATGGGACTGTACGTGGACCCTCAAGGTCGGAGGTCACGCACGCAGGAGCTCATGTGGCCTGCGGCTCCTGTCGCCTGTA
Seq A exon
GTTGCAGCTCCTCCCACGTCACGGTGTACAGCGAATACGGGGTGGATGTCTTCGACGTGCGCACCATGGAGTGGGTTCAGACCATCGGCCTGCGGAGG
Seq C2 exon
ATAAGACCTCTGAACTCTGATGGTAGCCTCAACCTGCTGGGCTGTGAGCCCCCACGCCTCATCTACTTCAAAAACAAGTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675-'54-52,'54-51,55-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(74.9=100)
A:
PF0078017=CNH=FE(12.0=100)
C2:
PF0078017=CNH=PD(2.6=24.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCTGTGCTGTAGAGCTCA
R:
AGCAGGTTGAGGCTACCATCA
Band lengths:
170-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]