GgaEX6039111 @ galGal3
Exon Skipping
Gene
ENSGALG00000011432 | CDC42BPB
Description
NA
Coordinates
chr5:52422934-52426557:-
Coord C1 exon
chr5:52425961-52426557
Coord A exon
chr5:52423130-52423227
Coord C2 exon
chr5:52422934-52423018
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTTAAATCTATGCAGGTT
3' ss Score
8.34
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
TCATCTTTTCCCCTGGGCCACTCTGGACGGATCAGAAGGAAGCTTTGACATTAAGCTTGCAGAAACTAAAGGCTGCCAATTGATTACAACTGGAACGCTAAAGAAGAGTTCTGCGACTTGTTTGTTTGTAGCTGTTAAACGGCAGGTTTTTTGCTATGAAATTCACAGAACTAAACCTTTCCACAAAAAATTCAGTGAAATTCAGGCTCCAGGAACTGTTCAGTGGATGACAGTGTTCAAGGACAAGCTCTGTGTTGGCTACCAGTCTGGGTTCTCTCTGTTGACCATCCAGGGAGATGGACAATCTATAAACCTGGTAAATCCTAATGACCCCTCACTTATGTTCCTCTCACAGCAGTCTTTTGATGCCCTTTGTGCTGTGGAGCTCAGTAATGAGGAGTACCTGCTTTGCTTCAGCCATATGGGAGTATACGTCGATTCGCAAGGTCGAAGGTCACGCATGCAGGAACTAATGTGGCCTGCAACTCCTGTTGCCTGTA
Seq A exon
GTTGCAATTCGTCGTACGTAACAGTGTACAGTGAATATGGTGTTGATGTATTTGATGTTAACACTATGGAATGGGTCCAGACTATTGGCCTGCGAAGG
Seq C2 exon
ATCAGACCATTAAACATGGATGGCACGCTGAACCTCCTTAACTGTGAGCCACCAAGACTAATATATTTCAAAAACAAGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432-'32-39,'32-38,34-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(74.5=100)
A:
PF0078017=CNH=FE(12.0=100)
C2:
PF0078017=CNH=PD(2.6=24.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGTGCTGTGGAGCTCAGT
R:
AGTTAAGGAGGTTCAGCGTGC
Band lengths:
173-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]