GgaEX6039111 @ galGal4
Exon Skipping
Gene
ENSGALG00000011432 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr5:49818317-49821940:-
Coord C1 exon
chr5:49821344-49821940
Coord A exon
chr5:49818513-49818610
Coord C2 exon
chr5:49818317-49818401
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTTAAATCTATGCAGGTT
3' ss Score
8.34
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
TCATCTTTTCCCCTGGGCCACTCTGGACGGATCAGAAGGAAGCTTTGACATTAAGCTTGCAGAAACTAAAGGCTGCCAATTGATTACAACTGGAACGCTAAAGAAGAGTTCTGCGACTTGTTTGTTTGTAGCTGTTAAACGGCAGGTTTTTTGCTATGAAATTCACAGAACTAAACCTTTCCACAAAAAATTCAGTGAAATTCAGGCTCCAGGAACTGTTCAGTGGATGACAGTGTTCAAGGACAAGCTCTGTGTTGGCTACCAGTCTGGGTTCTCTCTGTTGACCATCCAGGGAGATGGACAATCTATAAACCTGGTAAATCCTAATGACCCCTCACTTATGTTCCTCTCACAGCAGTCTTTTGATGCCCTTTGTGCTGTGGAGCTCAGTAATGAGGAGTACCTGCTTTGCTTCAGCCATATGGGAGTATACGTCGATTCGCAAGGTCGAAGGTCACGCATGCAGGAACTAATGTGGCCTGCAACTCCTGTTGCCTGTA
Seq A exon
GTTGCAATTCGTCGTACGTAACAGTGTACAGTGAATATGGTGTTGATGTATTTGATGTTAACACTATGGAATGGGTCCAGACTATTGGCCTGCGAAGG
Seq C2 exon
ATCAGACCATTAAACATGGATGGCACGCTGAACCTCCTTAACTGTGAGCCACCAAGACTAATATATTTCAAAAACAAGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432-'49-55,'49-54,52-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(74.5=100)
A:
PF0078017=CNH=FE(12.0=100)
C2:
PF0078017=CNH=PD(2.6=24.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGTGCTGTGGAGCTCAGT
R:
AGTTAAGGAGGTTCAGCGTGC
Band lengths:
173-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]