DreEX6046038 @ danRer10
Exon Skipping
Gene
ENSDARG00000042186 | paplnb
Description
papilin b, proteoglycan-like sulfated glycoprotein [Source:ZFIN;Acc:ZDB-GENE-030131-6023]
Coordinates
chr20:33606291-33608374:-
Coord C1 exon
chr20:33608314-33608374
Coord A exon
chr20:33608126-33608228
Coord C2 exon
chr20:33606291-33606421
Length
103 bp
Sequences
Splice sites
3' ss Seq
AACATTTGTCCTCTGCAAAGGAA
3' ss Score
5.05
5' ss Seq
GAGGTAGAA
5' ss Score
4.54
Exon sequences
Seq C1 exon
GACGGATGGTGGACACAATTGCGTGGGACCATCAAAGTCCTACAAGCTCTGTAACACACAG
Seq A exon
GAATGCCCTGCTGGATCTAGAGATTTCCGTGAGGAGCAGTGTTCCCACTTTGACCAAATGACCTTCCAGGGGAAACGTTATACCTGGCAGCCATACTATGGAG
Seq C2 exon
CTTCAAACCCGTGTGAGCTGGTCTGTGTGCCCAGAGGAGAGAACTTCTACTACCGTCACAGACCCGCTGTGGTGGACGGCACTCTATGCCACGTGGGCCGCAGAGACGTGTGTGTTGAGGGCGTCTGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042186-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(40.0=100)
A:
PF0009014=TSP_1=PD(2.0=2.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGATGGTGGACACAATTGC
R:
CAGACGCCCTCAACACACAC
Band lengths:
187-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]