GgaEX1006471 @ galGal3
Exon Skipping
Gene
ENSGALG00000024298 | ADAMTSL5
Description
NA
Coordinates
chr28:2569549-2570036:-
Coord C1 exon
chr28:2569976-2570036
Coord A exon
chr28:2569760-2569868
Coord C2 exon
chr28:2569549-2569676
Length
109 bp
Sequences
Splice sites
3' ss Seq
CCATCGTGCTGTCCCCACAGGGC
3' ss Score
11.51
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CTCTGCCGAGGAGGAGCCGTGCATAGGAGACCAGCGGCAGTACCGGCTCTGCCAGCTCCAG
Seq A exon
GGCTGCCCTGGCGGCTCAGTGCCGTTCCGTGCCATGCAGTGCTCCCTATACGACGACACACCCGTGCAGGGCATGCAGACCCGGCACCGCTGGGTGCCCTTCTATGGAG
Seq C2 exon
CCCCCAACGTCTGTGACCTCAACTGCTTGGCTGTGGGGCACAACTTCTACTACACCTTTGGCCGCGTGTTGGACGGCACCCGCTGCAGGCCCGGCTCCACGGATCTGTGCGTCGGTGGGCGCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024298-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(41.7=100)
A:
PF0009014=TSP_1=PD(2.1=2.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCCGAGGAGGAGCC
R:
CACCGACGCACAGATCCG
Band lengths:
178-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]