DreEX6007270 @ danRer10
Exon Skipping
Gene
ENSDARG00000052118 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr7:50227943-50231857:-
Coord C1 exon
chr7:50231797-50231857
Coord A exon
chr7:50228185-50228290
Coord C2 exon
chr7:50227943-50228070
Length
106 bp
Sequences
Splice sites
3' ss Seq
CCTTGTGTCTGTATCATCAGGAG
3' ss Score
7.46
5' ss Seq
GCGGTCAGT
5' ss Score
6.52
Exon sequences
Seq C1 exon
AAATCTGGTTGGAGGGCCGTGCCCTGGTGACACCCGGCAGTATAAGATTTGTAACTCAAAG
Seq A exon
GAGTGTCCTGCTGACTCTATGGACTTCAGAGAGCTGCAGTGTAAAGCGTTCAATGACAGACCCCTGGTCGCTGGCAGCAGTTTCCACTGGACTACCTTTCACGGCG
Seq C2 exon
GCTCTGACCCGTGTGAGCTCAGCTGTCTGGCTATTGGACACAACTTCTACTACAACTTTGGAAGGGTGCTTGATGGGACACCATGCCAATCAGATCAGGGGACAGTCTGTGTGAATGGGAAGTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052118-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(40.8=100)
A:
PF0009014=TSP_1=PD(2.0=2.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCTGGTTGGAGGGCCGT
R:
ACACTTCCCATTCACACAGACTG
Band lengths:
186-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]