BtaEX6040355 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MXP8]
Coordinates
chr7:45563931-45565704:-
Coord C1 exon
chr7:45565644-45565704
Coord A exon
chr7:45565391-45565499
Coord C2 exon
chr7:45563931-45564058
Length
109 bp
Sequences
Splice sites
3' ss Seq
GCACCCATCTCTGTCCCCAGGAC
3' ss Score
10.47
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTTTCCAAGGGAAGAGCTGTGCTGGGGGGACACCCATGAGTACCGCCTCTGCCAGCAGCCC
Seq A exon
GACTGTCCTCCAGGGGCCATGCCCTTTCGAGACCTCCAATGTGCCCTCTACAATGGCCACCCTGTCCTAGGCACCCAGAAGACCTACCAGTGGGTGCCCTTCTATGGTG
Seq C2 exon
CACCCAACCACTGCGACCTCAACTGCCTAGCGGTGGGGCACGACTTCTATCACAGCTTCGGTCGCGTACTGGACGGTACCCCCTGCAGTCCGGGCGCCCAAGATCTCTGTGTGGCTGGCCGCTGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046263-'4-10,'4-8,5-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(41.7=100)
A:
PF0009014=TSP_1=PD(2.1=2.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCAAGGGAAGAGCTGTGC
R:
GCCAGCCACACAGAGATCTTG
Band lengths:
179-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]