MmuEX6049826 @ mm10
Exon Skipping
Gene
ENSMUSG00000043822 | Adamtsl5
Description
ADAMTS-like 5 [Source:MGI Symbol;Acc:MGI:1913798]
Coordinates
chr10:80343599-80345103:-
Coord C1 exon
chr10:80345043-80345103
Coord A exon
chr10:80344833-80344941
Coord C2 exon
chr10:80343599-80343726
Length
109 bp
Sequences
Splice sites
3' ss Seq
CCACCTATATCTTCGCCCAGGAC
3' ss Score
5.88
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
ACTTCCCGGAGAGGAACTTTGTTGGGGCGACAGCCATGAATACCGGGTGTGCCAGCTGCCG
Seq A exon
GACTGCCCTCCAGGGACCACACCATTCCGAGACCTGCAGTGTTCTCTCTACAATGGCCACCCTGTCCTGGACACCCAGAAAACCTACCAGTGGGTGCCCTTCCACGGGG
Seq C2 exon
CGCCCAATGTGTGTGACCTCAACTGCCTAGCTGAAGGCCACGCCTTCTACCACAGCTTTGGCCGCGTGCTGGATGGCACCCCCTGCACCCCGGGTACCCAGGGTCTCTGCGTGGCAGGCCGCTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043822-'17-17,'17-13,19-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(41.7=100)
A:
PF0009014=TSP_1=PD(2.1=2.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGAGGAACTTTGTTGGGG
R:
TGCCACGCAGAGACCCTG
Band lengths:
171-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types