RnoEX0006944 @ rn6
Exon Skipping
Gene
ENSRNOG00000033787 | Adamtsl5
Description
ADAMTS-like 5 [Source:RGD Symbol;Acc:1305607]
Coordinates
chr7:12232154-12233723:+
Coord C1 exon
chr7:12232154-12232214
Coord A exon
chr7:12232334-12232429
Coord C2 exon
chr7:12233596-12233723
Length
96 bp
Sequences
Splice sites
3' ss Seq
CACCCAGGACTGCCCCCCAGGGG
3' ss Score
3.55
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
ACTTCCTGAGGAGGAACTTTGCTGGGGGGACAGTCATGAATACCGGGTGTGCCAGCTGCCG
Seq A exon
GGGCCATACCATTCCGAGACCTGCAGTGTTCTCTCTACAATGGCCACCCCGTCCTGGGCACCCAGAAAACCTATCAATGGGTGCCCTTCCACGGGG
Seq C2 exon
CGCCCAATCTGTGTGACCTCAACTGCCTGGCTGAAGGCCACGCCTTCTACCACAGCTTTGGCCGCGTGCTGGATGGCACCCCCTGCACCCCGGGGACCCAGGGTCTCTGCGTGGCAGGCCGCTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033787-'13-10,'13-9,14-10
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(41.7=100)
A:
PF0009014=TSP_1=PD(2.1=2.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGAGGAACTTTGCTGGG
R:
TGCCACGCAGAGACCCTG
Band lengths:
172-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]