HsaEX6091575 @ hg19
Exon Skipping
Gene
ENSG00000185761 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:27912]
Coordinates
chr19:1508442-1510427:-
Coord C1 exon
chr19:1510367-1510427
Coord A exon
chr19:1510149-1510257
Coord C2 exon
chr19:1508442-1508569
Length
109 bp
Sequences
Splice sites
3' ss Seq
TCACCTATCTCTGTCCCTAGGAC
3' ss Score
13
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GCTTCCTGGGGAAGAACCGTGCTGGGGAGACTCCCATGAGTACCGCCTCTGCCAGTTGCCA
Seq A exon
GACTGCCCCCCAGGGGCTGTGCCCTTCCGAGACCTACAGTGTGCCCTGTACAATGGCCGCCCTGTCCTGGGCACCCAGAAGACCTACCAGTGGGTGCCCTTCCATGGGG
Seq C2 exon
CGCCCAACCAGTGCGACCTCAACTGCCTGGCTGAGGGGCACGCCTTCTACCACAGCTTCGGCCGCGTCCTGGACGGCACCGCCTGCAGCCCGGGTGCCCAGGGGGTCTGCGTGGCTGGCCGCTGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185761-'4-8,'4-6,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=FE(41.7=100)
A:
PF0009014=TSP_1=PD(2.1=2.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGGGGAAGAACCGTGC
R:
GGCCGAAGCTGTGGTAGAAG
Band lengths:
122-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)