DreEX6048568 @ danRer10
Exon Skipping
Gene
ENSDARG00000069484 | dab2ipa
Description
DAB2 interacting protein a [Source:ZFIN;Acc:ZDB-GENE-081104-516]
Coordinates
chr8:12146291-12210785:-
Coord C1 exon
chr8:12210667-12210785
Coord A exon
chr8:12152008-12152164
Coord C2 exon
chr8:12146291-12146389
Length
157 bp
Sequences
Splice sites
3' ss Seq
GCATGTGTTCCTCTCTCCAGTAG
3' ss Score
7.75
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGCTTCTTGAGCCGCAGACTGAAGGGTTCCATTAAACGCACCAAAAGCCAGCCGAAGCTCGACCGACACAGCAGCTTCAGGAACATCTTACCGGGCTTCAAGAGCGCGGAGAATGACAG
Seq A exon
TAGATCCCATCTGATGCCGAGGCTGAAGGAATCACGGTCTCACGAGTCGTTGCTCAGCCCCAGCAGTGCAGTTGAAGCTCTAGATCTCAGTATGGAGGAGGAAGTGCTCATCAAACCCGTGCACAGCAGCATCCTGGGACAGGATTTCTGCTTCGAG
Seq C2 exon
GTAACTACTTCAACAGGAAGCAAATGCTTCTCATGCCGGTCGGCAGCCGAGAGAGACAAATGGATGGAGAATTTGAGACGTGCTGTGCATCCCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069484-'2-5,'2-3,5-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.309 A=0.302 C2=0.299
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(26.5=75.0)
A:
PF0016924=PH=FE(46.0=100)
C2:
PF0016924=PH=PD(25.7=87.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTGAGCCGCAGACTGAAG
R:
TATTGGGATGCACAGCACGTC
Band lengths:
213-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]