GgaEX0001620 @ galGal3
Exon Skipping
Gene
ENSGALG00000001419 | DAB2IP
Description
NA
Coordinates
chr17:9230922-9285899:+
Coord C1 exon
chr17:9230922-9231040
Coord A exon
chr17:9282628-9282781
Coord C2 exon
chr17:9285801-9285899
Length
154 bp
Sequences
Splice sites
3' ss Seq
CGGTTGCATTTTTCCTCCAGATC
3' ss Score
9.56
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGGTTCCTCAGCCGTCGGCTTAAAGGCTCCATCAAAAGGACAAAGAGCCAACCGAAGCTCGATAGGAACAGCAGCTTCCGGCACATCTTACCTGGCTTCAGGAGCGTGGACAATGAGAG
Seq A exon
ATCCCATCTAATGCCGAGGCTGAAAGAATCGCGCTCCCACGAGTCTCTGCTCAGTCCCAGTAGTGCTGTTGAGGCTTTGGATCTCAGCATGGAGGAAGAAGTGGTCATCAAGCCGGTCCACAGCAGCATCCTGGGACAAGACTACTGCTTCGAG
Seq C2 exon
GTGACGACTTCATCAGGAAGTAAGTGCTTCTCGTGTCGTTCTGCAGCAGAGCGAGATAAATGGATGGAAAACCTGCGGCGTGCCGTGCACCCAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001419-'4-7,'4-6,9-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.269 C2=0.242
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(25.5=70.0)
A:
PF0016924=PH=FE(46.4=100)
C2:
PF0016924=PH=PD(26.4=87.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTCCTCAGCCGTCGG
R:
CTTATTTGGGTGCACGGCA
Band lengths:
218-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]