HsaEX0018445 @ hg38
Exon Skipping
Gene
ENSG00000136848 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:HGNC:17294]
Coordinates
chr9:121699325-121758996:+
Coord C1 exon
chr9:121699325-121699458
Coord A exon
chr9:121757013-121757166
Coord C2 exon
chr9:121758898-121758996
Length
154 bp
Sequences
Splice sites
3' ss Seq
CACACCTACTGCCACCCCAGGTC
3' ss Score
5.42
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GGCTTCCTCAGCCGCCGCCTCAAGGGCTCCATCAAGCGCACCAAGAGCCAGCCCAAGCTGGACCGCAACCACAGCTTCCGCCACATCCTGCCGGGGTTCCGGAGCGCCGCCGCCGCCGCCGCGGACAATGAGAG
Seq A exon
GTCCCATCTGATGCCGAGGCTGAAGGAGTCTCGCTCCCACGAGTCCCTGCTCAGCCCCAGCAGTGCGGTGGAGGCGCTGGACCTCAGCATGGAGGAAGAGGTGGTCATCAAGCCCGTGCACAGCAGCATCCTTGGCCAGGACTACTGCTTCGAG
Seq C2 exon
GTGACGACGTCATCAGGAAGCAAGTGCTTTTCCTGCCGGTCTGCAGCTGAGCGGGATAAGTGGATGGAGAACCTCCGGCGAGCGGTGCATCCCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136848_MULTIEX2-8/8=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.645 A=0.246 C2=0.189
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(29.9=77.8)
A:
PF0016924=PH=PU(57.5=87.5)
C2:
PF0016924=PH=PD(24.8=87.9)
Main Skipping Isoform:
ENST00000259371fB1948
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGGGCTCCATCAAGCG
R:
CTTGTTGGGATGCACCGCTC
Band lengths:
215-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development