MmuEX1008116 @ mm10
Exon Skipping
Gene
ENSMUSG00000026883 | Dab2ip
Description
disabled 2 interacting protein [Source:MGI Symbol;Acc:MGI:1916851]
Coordinates
chr2:35661492-35708912:+
Coord C1 exon
chr2:35661492-35661625
Coord A exon
chr2:35707648-35707801
Coord C2 exon
chr2:35708814-35708912
Length
154 bp
Sequences
Splice sites
3' ss Seq
CCTGCTAACCACCTCCTCAGGTC
3' ss Score
7.6
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GGCTTCCTCAGCCGCCGCCTCAAGGGCTCCATCAAGCGCACCAAGAGCCAGCCCAAACTGGACCGCAACCACAGCTTCCGCCACATCCTGCCGGGGTTCCGGAGCGCAGCCGCCGCCGCCGCGGACAATGAGAG
Seq A exon
GTCCCATCTGATGCCAAGGCTGAAGGAGTCTCGGTCACACGAGTCCCTGCTCAGCCCCAGCAGCGCAGTGGAGGCCCTGGACCTCAGCATGGAGGAGGAGGTGATTATCAAGCCCGTTCACAGCAGCATCCTGGGTCAGGACTACTGCTTCGAG
Seq C2 exon
GTGACAACATCATCAGGAAGCAAGTGTTTTTCCTGCCGGTCAGCCGCTGAGCGCGATAAGTGGATGGAGAACCTGAGGCGAGCAGTGCACCCCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026883-'13-21,'13-19,25-21
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.578 A=0.271 C2=0.198
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(29.9=77.8)
A:
PF0016924=PH=PU(61.7=96.2)
C2:
PF0016924=PH=PD(35.8=87.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGGGCTCCATCAAGCG
R:
CTTGTTGGGGTGCACTGCTC
Band lengths:
215-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types