DreEX6048597 @ danRer10
Exon Skipping
Gene
ENSDARG00000058731 | slc2a6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:ZFIN;Acc:ZDB-GENE-081104-301]
Coordinates
chr8:12823848-12826148:-
Coord C1 exon
chr8:12825942-12826148
Coord A exon
chr8:12824194-12824293
Coord C2 exon
chr8:12823848-12824059
Length
100 bp
Sequences
Splice sites
3' ss Seq
GAAAATGTTTTTTCACCCAGGTG
3' ss Score
7.53
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
TCAATTTTCACTCTTGGAGCGGCTGCAGGGGGTCTCAGTGCCATGTTTCTGAATGACCGAGTCGGAAGAAAAATAAGCATCATGATATCAGGATTACCGTCTGTTCTTGGTCTCCTTGTGATGGGATCTGCACAAAACTTCTGGATGTTGTTATGGGGCAGATTTCTGACTGGTATCGCTGGTGGCATCACTGCGGGCTCCATTCCT
Seq A exon
GTGTACGTGTCAGAGATCTCCCACCCGTCCGTAAGGGGTGCGCTGGGTTCATGTCCTCAGATCACTGCCGTATTTGGAAGTCTAGCGCTCTACGCTTTTG
Seq C2 exon
GCCTGATTTTGCCGTGGAGGTGGCTGGCTGTGGCTGGGGAAGTTCCTGTTGTTATCATGATGCTTTTGCTTTGCTGCATGCCGACCTCTCCACGTTACCACATCATGAAAGGAAACAGAGCTAAAGCTGTTAAATCACTAGAATGGCTCAGAGGGCCCAATTCTGATTATATGACTGAGTTTAATAAGATCGAACGCAGCATCACAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058731-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(15.0=100)
A:
PF0008319=Sugar_tr=FE(7.3=100)
C2:
PF0008319=Sugar_tr=FE(15.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCACTCTTGGAGCGGCTG
R:
AACAACAGGAACTTCCCCAGC
Band lengths:
256-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]