HsaEX6063755 @ hg38
Exon Skipping
Gene
ENSG00000160326 | SLC2A6
Description
solute carrier family 2 member 6 [Source:HGNC Symbol;Acc:HGNC:11011]
Coordinates
chr9:133475400-133477241:-
Coord C1 exon
chr9:133477035-133477241
Coord A exon
chr9:133476237-133476336
Coord C2 exon
chr9:133475400-133475611
Length
100 bp
Sequences
Splice sites
3' ss Seq
GCGGCGGCTGTGTCTTGCAGGTG
3' ss Score
8.5
5' ss Seq
TTGGCAAGT
5' ss Score
2.72
Exon sequences
Seq C1 exon
TCCGTGTTCACCCTGGGAGCAGCGGCCGGAGGCCTGAGTGCCATGATCCTCAACGACCTCCTGGGCCGGAAGCTGAGCATCATGTTCTCAGCTGTGCCGTCGGCGGCCGGCTATGCGCTCATGGCGGGTGCGCACGGCCTCTGGATGCTGCTGCTCGGAAGGACGCTGACGGGCTTCGCCGGGGGGCTCACAGCTGCCTGCATCCCG
Seq A exon
GTGTACGTGTCTGAGATTGCTCCCCCAGGCGTTCGTGGGGCTCTGGGGGCCACACCCCAGCTCATGGCAGTGTTCGGATCCCTGTCCCTCTACGCCCTTG
Seq C2 exon
GCCTCCTGCTGCCGTGGCGCTGGCTGGCTGTGGCCGGGGAGGCGCCTGTGCTCATCATGATCCTGCTGCTCAGCTTCATGCCCAACTCGCCGCGCTTCCTGCTCTCTCGGGGCAGGGACGAAGAGGCCCTGCGGGCGCTGGCCTGGCTGCGTGGGACGGACGTCGATGTCCACTGGGAGTTCGAGCAGATCCAGGACAACGTCCGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160326-'3-7,'3-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.031
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PU(91.5=98.2)
A:
PF0008319=Sugar_tr=FE(10.8=100)
C2:
PF0008319=Sugar_tr=FE(22.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGCCATGATCCTCAACG
R:
GCAGCAGGATCATGATGAGCA
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains