MmuEX0043039 @ mm10
Exon Skipping
Gene
ENSMUSG00000036067 | Slc2a6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:MGI Symbol;Acc:MGI:2443286]
Coordinates
chr2:27024585-27027998:-
Coord C1 exon
chr2:27027817-27027998
Coord A exon
chr2:27025223-27025322
Coord C2 exon
chr2:27024585-27024793
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTGGGGCATGTGCCTTACAGGTG
3' ss Score
7.42
5' ss Seq
TTGGCAAGT
5' ss Score
2.72
Exon sequences
Seq C1 exon
GTAGGGCGGAGCTTCGCCTGCTGTGCTGAGGGCTCAGGCAGATGCTTTAGCTCTGCAGTGGAGTCCCGCTGTATCTGACCATCCGCGCTGGCCATGCAGGAACCCCTGCTAAGAACCGAGGGACTCGACTATGATACCTTCCCCGAGGTGCCCGCGACTCCTGGAGAGAGAGAACGAGCCGG
Seq A exon
GTGTACGTGTCTGAGATTGCACCCCCTGATGTTCGTGGGGCCCTGGGGGCCACACCGCAGCTCATGGCCGTGTTTGGATCCCTGTCTCTCTACGCCCTTG
Seq C2 exon
GTCTGCTGCTACCTTGGCGATGGCTTGCTGTGGCTGGAGAGGGGCCGGTTCTCATCATGATCCTGCTGCTCAGCTTCATGCCCAACTCTCCTCGCTTCTTGCTCTCAAAGAGCCGGGATGAGGAGGCACTGCAGGCGCTGACCTGGCTGCGAGCTGACTCCGAGGTCCATTGGGAGTTTGAGCAGATCCAGGACAACGTGCGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036067_MULTIEX1-3/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008319=Sugar_tr=FE(10.9=100)
C2:
PF0008319=Sugar_tr=FE(15.3=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTCAGGCAGATGCTTTAG
R:
GAGGAGAGTTGGGCATGAAGC
Band lengths:
246-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types