RnoEX0082167 @ rn6
Exon Skipping
Gene
ENSRNOG00000005900 | Slc2a6
Description
solute carrier family 2 member 6 [Source:RGD Symbol;Acc:1309317]
Coordinates
chr3:5571574-5573268:-
Coord C1 exon
chr3:5573062-5573268
Coord A exon
chr3:5572422-5572521
Coord C2 exon
chr3:5571574-5571782
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTGGGGCCTGTACCTTACAGGTG
3' ss Score
8.11
5' ss Seq
TTGGCAAGT
5' ss Score
2.72
Exon sequences
Seq C1 exon
TCCGTGTTCACCCTGGGTGCCGCCGCTGGGGGCCTCAGTGCTATGCTACTCAATGACCTCTTGGGCCGGAAGCTCAGCATCATGTTTTCCGCTGTCCCCTCGGCCATTGGCTATGCACTCATGGCTGGTGCCCGTGGCCTCTGGATGCTTCTGCTGGGGAGGATGCTGACAGGCTTTGCCGGGGGACTCACTGCTGCCTGCATCCCG
Seq A exon
GTGTACGTGTCTGAGATTGCACCCCCGGGTGTTCGCGGGGCCCTGGGGGCCACGCCGCAGCTCATGGCCGTGTTTGGATCCCTGTCTCTCTATGCCCTTG
Seq C2 exon
GTCTTCTGCTGCCTTGGCGATGGCTTGCCGTGGCCGGGGAGGGGCCTGTTCTGGTCATGATCCTGCTGCTTAGCTTCATGCCCAACTCGCCTCGCTTCCTACTGTCTAAGAGCCGGGATGAGGAAGCACTGCAGGCGCTGATCTGGCTGCGAGCGGACTCTGAGGTCCACTGGGAGTTTGAGCAGATCCAGGACAACGTGCGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005900-'4-3,'4-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0008319=Sugar_tr=PU(21.6=94.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATGTTTTCCGCTGTCCCC
R:
CCTCATCCCGGCTCTTAGACA
Band lengths:
252-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]