DreEX6048601 @ danRer10
Exon Skipping
Gene
ENSDARG00000058731 | slc2a6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:ZFIN;Acc:ZDB-GENE-081104-301]
Coordinates
chr8:12816821-12820170:-
Coord C1 exon
chr8:12819994-12820170
Coord A exon
chr8:12819768-12819913
Coord C2 exon
chr8:12816821-12819570
Length
146 bp
Sequences
Splice sites
3' ss Seq
GTAAAACTCTGTTTATGCAGGTT
3' ss Score
5.48
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
GATTTTTGATATATATAGCCATGCTTTCAATGACCATGTACACCCACCAAACACCATGCAGCCAAGGGAATCTTACCCTAACAGACGGCCTGAATATCTCTTCTGAAGTCCAAGCGGGGGCTGCTTTTGATCCAAAGACTCTAATTCCTCTCATCAGTGCTATGGTTATCATTTTTG
Seq A exon
GTTATGCTATGGGCTGGGGTCCAATCACATGGCTGCTAATGTCAGAGATTTTACCTTTGGGTGCGCGTGGTGTCGCATCCGGTTTGTGCGTTGGTGTTAGTTGGATCACAGCCTTCGTCCTGACGCAACTCTTCATGCACGTTGTG
Seq C2 exon
GTCGCCTATGGACTGTATGTACCTTTCCTGTTCTTCTGTGTGGTCTCTGTAGTGAATATAATATTCACTGCTAAATGCGTGCCGGAAACCAAAGGTCGAACTCTGGAGGAGATTGAGAACTACTTCAGGACTGGCAGAAGCTTCACCATTCATGATCCTTAAAACGTCCATATGCTGGATTCAGAAGGTGACACTATTGAATCTACACTGTAGAAAATATGTTAAATCACTGTGTCTGTATTTTGTGATTCACAAGTGTTTATCAACGGTTGTGAATTGCATTATGAGACGTTGATCTTTGCTCTGTCGACTTTTGGTGTTGAAAATTCAACTCTACACTCTTTAATGACATTTTAGTAGTTTGAACTCATAGGTTGTTTTTAATCACGTGGTTCTGGTGAAGTGTAAAATCCAGATGGAGGGCAGGAAGTAAAAAACTGAATGGGACTCATAGAGGAAAGTCTGTATTTTTCAATAGTATCTGGATGCAGCCTTTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058731-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(13.0=100)
A:
PF0008319=Sugar_tr=FE(10.6=100)
C2:
PF0008319=Sugar_tr=PD(9.0=75.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTAACAGACGGCCTGAAT
R:
GTGAAGCTTCTGCCAGTCCTG
Band lengths:
249-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]