MmuEX6099823 @ mm9
Exon Skipping
Gene
ENSMUSG00000036067 | Slc2a6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:MGI Symbol;Acc:MGI:2443286]
Coordinates
chr2:26876883-26879163:-
Coord C1 exon
chr2:26878608-26879163
Coord A exon
chr2:26878239-26878384
Coord C2 exon
chr2:26876883-26877589
Length
146 bp
Sequences
Splice sites
3' ss Seq
TGCTCCTCTCTTCCGGTCAGGCT
3' ss Score
7
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
TGCTGCTGTCACCATGGACCTGGCGGGCCGAAAAGTTCTGCTCTATGTGTCAGGTGAGTGTCTCCACTGTAATGTACACCTCTTACTCCTACAGCCACTGCAAACTCTAGGCCACAGCCAAGCCTCCCTAGCACACGGTCCAGGACCTAGCAAATGGCAGCTGCTCCACACAGGTCTGCTCATGCTCCAAGCACAGAGGAGCCCACCCACCCACCCAACTCAATGGTGTGGCAGGAGACCGTGAGCTTGCCCTTCTGTGTTGGGGGCAGAGGTGTAGTGGGGCTCGCAATAGACCTCACACTCGGAGGAATCTGGTCCTGAGGTGCCATGATCCACAGCATCCGTCATGTTTGCTGCCAACCTGACACTGGGGCTCTACGTCCAGTTTGTGCCAAGGCCTCTGACCCCCAACAGCACTGTGGAGATCGTGACCCTGGGGGACACAGCCTTCAACTATCTTACCCTGATACCCCTGCTGGCCACCATGCTCTTCATTATGG
Seq A exon
GCTATGCCATGGGCTGGGGTCCCATCACCTGGCTCCTCATGTCTGAGGTTCTGCCCTTGCGTGCCCGTGGTGTGGCCTCAGGGCTCTGCGTGCTGGTCAGCTGGCTCACAGCCTTCGTCCTCACTAACTACTTCCTGCTGGCAGTG
Seq C2 exon
AATGCCTTCGGCCTCCAGGTGCCTTTCTTCTTCTTCTCGGCCATCTGCCTGCTCAGCTTGCTCTTCACAGGCTGCTGTGTGCCTGAGACCAGGGGCCGCTCGCTGGAGCAGATCGAGGCCTTCTTCCACACTCGCAGGATGTCCTTCAGGCCCTAGTCAGGGTCTCACCTGTAAGGGGCCAAACCACCCAGGCCAGGCCTATGCACTGGCCACAGATTCACACCTGCCACTGGGAGCAGCAGCACCCCTGCCATCAGCCAGAGCACACTTCCACCTTGGGACAGGCAGTTTACCAACAATGGGCTGGTGGGCTCCAGCAGAAGCCTGCAGTGCTGAGATCTGCAGGGGGAGCAGGCAGCCCTGCCCCAGACTGAGCAGAGGCTGTACCCAAGAACAAGGCTGTCGGGACCTCCGATCTGGTTCCTCAGTCCTACGAGGAACACTTCCCATGTAGGCCCGTGTTGAGGACAGGAAACAGAGATGGAGGTGGCAAAGTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036067-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(12.0=100)
A:
PF0008319=Sugar_tr=FE(10.7=100)
C2:
PF0008319=Sugar_tr=PD(9.1=78.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCACCATGCTCTTCATT
R:
CAGGTGTGAATCTGTGGCCAG
Band lengths:
251-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: