RnoEX6016066 @ rn6
Exon Skipping
Gene
ENSRNOG00000005900 | Slc2a6
Description
solute carrier family 2 member 6 [Source:RGD Symbol;Acc:1309317]
Coordinates
chr3:5568321-5570165:-
Coord C1 exon
chr3:5569986-5570165
Coord A exon
chr3:5569606-5569751
Coord C2 exon
chr3:5568321-5569000
Length
146 bp
Sequences
Splice sites
3' ss Seq
TGCCCCTCTCTTCTGACCAGGCT
3' ss Score
8.24
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
CATCCATTATGTTTGTCGCCAACCTGACGCTGGGGCTGTATGTCCAGCTTGTGCCAAGGACTCTGACCCCCAACAGCACTGTGGAGATCGTGACGCTTGGGGGCACGGAGCAGCCCCCAGCCGCGGCCTTCAACTATCTCACCCTGATACCCCTGCTGGCCACCATGCTCTTCATTATGG
Seq A exon
GCTATGCCATGGGCTGGGGGCCCATCACCTGGCTCCTCATGTCTGAGGTTCTGCCCCTGCGTGCCCGTGGTGTGGCCTCAGGGCTCTGCGTGCTGGTCAGCTGGCTCACAGCCTTCGTCCTCACTAAGTACTTCCTGCTGGCAGTG
Seq C2 exon
AATGCCTTCGGCCTCCAGGTGCCTTTCTTCTTCTTCTCGGCCATCTGCCTGCTCAGCCTGCTCTTCACAGGCTGCTGTGTGCCTGAGACCAGGGGCCGCTCGCTGGAGCAGATCGAGGCCTTCTTCCACACTCGCAGGATGTCCTTCAGGCCCTAGTCAGGGGCTTGCCTGTAAGGGGCCAGGCCATGTGGGCCAGGCCTGTGCACACCTGCAGCCGGGAGCAGCAGCACCCCTGCCGTCAGCCACTGCACACTTCCACCTCGGACAGGCAGTTCACCAACTGTGGGCTGGTGGGCCCCAGCAGGCAGCCCGCAGTGCTGTAATACCTCAGCTGAGATCCGCAGGGGGGCAGGCAGCCCTGCCCCAGACTGAGCAAAGGCTGTACCCAAGAACAATGCTGTTGGGACCTCCGGTCTAGTTCCTCATTCCTACAAGGAACACTTCCCATGTAGGGCCATGTTGAGGACAGAAAACAGGGATGGAGGTGGCAATGTGGCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005900-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(19.7=100)
A:
PF0008319=Sugar_tr=FE(15.7=100)
C2:
PF0008319=Sugar_tr=PD(13.4=78.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACTGTGGAGATCGTGAC
R:
GACATCCTGCGAGTGTGGAAG
Band lengths:
250-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]