HsaEX6063759 @ hg38
Exon Skipping
Gene
ENSG00000160326 | SLC2A6
Description
solute carrier family 2 member 6 [Source:HGNC Symbol;Acc:HGNC:11011]
Coordinates
chr9:133471095-133474088:-
Coord C1 exon
chr9:133473980-133474088
Coord A exon
chr9:133473105-133473250
Coord C2 exon
chr9:133471095-133472176
Length
146 bp
Sequences
Splice sites
3' ss Seq
CTGCCTCCTCCTCCGAGCAGGCT
3' ss Score
7.84
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
CCCCCCAAGGACGACGCAGCCATCGTTGGGGCCGTGCGGCTCCTGTCCGTGCTGATCGCCGCCCTCACCATGGACCTCGCAGGCCGCAAGGTGCTGCTCTTCGTCTCAG
Seq A exon
GCTACGCCGTGGGCTGGGGTCCCATCACCTGGCTGCTCATGTCTGAGGTCCTGCCCCTGCGTGCCCGTGGCGTGGCCTCAGGGCTCTGCGTGCTGGCCAGCTGGCTCACCGCCTTCGTCCTCACCAAGTCCTTCCTGCCAGTGGTG
Seq C2 exon
AGCACCTTCGGCCTCCAGGTGCCTTTCTTCTTCTTCGCGGCCATCTGCTTGGTGAGCCTGGTGTTCACAGGCTGCTGTGTGCCCGAGACCAAGGGACGGTCCCTGGAGCAGATCGAGTCCTTCTTCCGCACGGGGAGAAGGTCCTTCTTGCGCTAGGTCAAGGTCCCCGCCTGGAGGGGGCCAAACCCCCAGTGGCTGGGCCTCTGTGTTGGCTACAAACCTGCACCCTGGGACCAAGAGGCAGCAGTCATCCCTGCCACCAGCCAGAGCACAGGAAGAGCAGTGTGATGGGGCCTCAGCAGCGGGTGCCCCTGGCTCGGGACAGGTAGCACTGCTGTCCAGCCACAGCCCCAGCCCAGGCAGCCCACAGTGCTGCACGTAGCCATGGGCCGCAGGAGTGCATACAACCCTGCATCCAGGGACACGGCCCTGCTGGGTGACCTCAGGCCTAGTCCCTTTCCCTTGCGTGAAGGACACGCCCCACAGAAGGCTACGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160326_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PD(11.4=94.6)
A:
PF0008319=Sugar_tr=FE(10.5=100)
C2:
PF0008319=Sugar_tr=PD(8.9=78.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGTGCTGCTCTTCGTCTC
R:
TTTGTAGCCAACACAGAGGCC
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains