DreEX6049554 @ danRer10
Exon Skipping
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21295861-21298377:+
Coord C1 exon
chr8:21295861-21296061
Coord A exon
chr8:21298100-21298210
Coord C2 exon
chr8:21298282-21298377
Length
111 bp
Sequences
Splice sites
3' ss Seq
TAACAAAACTCTTTTTACAGACA
3' ss Score
6.51
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AACTTTCTTCGCATTCAGAACAACAAAACAAACTATAACCTGGTGTCAGAGACTCTGCAGTTTCTGGACATCATGTGCGGCAGCACAACTGGAGGACTGGGTCTGCTGGGCCTTTACATCAATGAGAACAATGTGGAGCTGATCACACAGACCCTGGAGACCCTCACAGAGTACTGTCAGGGGCCATGCCAAGAGAACCAG
Seq A exon
ACATGCATTGTCTCCCATGAGTGCAACGGTATTGACATCATCACAGCTTTAATTCTGAATGACATCAGTCCTTTATGTCGATATCGCATGGAACTGGTGCTTCAGCTCAAG
Seq C2 exon
GACAATGCCTCTAAGCTTCTTCTGGCTCTGATGGAGAGCCGTCATGACAGTGAGAATGCAGAGAGGATCCTGTTTAATCTTCGACCCAGAGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741-'52-52,'52-51,53-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=FE(55.0=100)
A:
PF084546=RIH_assoc=PD(18.3=59.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTCAGAGACTCTGCAGT
R:
CAGTTCTCTGGGTCGAAGATT
Band lengths:
257-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]