RnoEX0045436 @ rn6
Exon Skipping
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5703850-5704735:+
Coord C1 exon
chr20:5703850-5704050
Coord A exon
chr20:5704175-5704285
Coord C2 exon
chr20:5704640-5704735
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTCCCACCGCCTCCCGTCAGACC
3' ss Score
7.1
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
AACTTCCTGCGCTGTCAGAACAACAAGACCAACTACAACCTCGTGTGTGAGACCCTGCAGTTCCTGGACATCATGTGTGGCAGCACCACAGGGGGCCTGGGGCTGCTGGGGCTCTACATCAACGAGGACAATGTGGGCCTGGTCATCCAGACCTTGGAGACCCTCACAGAGTACTGCCAGGGCCCGTGCCATGAGAACCAG
Seq A exon
ACCTGCATCGTGACTCACGAGTCCAACGGCATTGACATCATCACGGCGCTGATCCTCAATGACATCAGCCCGCTCTGCAAGTACCGCATGGACCTGGTGCTGCAGCTCAAG
Seq C2 exon
GACAATGCCTCCAAGCTGCTCCTGGCTCTGATGGAGAGTCGACATGACAGCGAGAATGCAGAACGCATCCTCATCAGCCTTCGGCCTCAGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795-'51-60,'51-59,52-60
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.031
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=FE(54.5=100)
A:
PF084546=RIH_assoc=PD(18.2=59.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTGCGCTGTCAGAACAA
R:
TCTCGCTGTCATGTCGACTCT
Band lengths:
254-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]