HsaEX0032597 @ hg19
Exon Skipping
Gene
ENSG00000096433 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:6182]
Coordinates
chr6:33653830-33654881:+
Coord C1 exon
chr6:33653830-33654030
Coord A exon
chr6:33654186-33654296
Coord C2 exon
chr6:33654786-33654881
Length
111 bp
Sequences
Splice sites
3' ss Seq
CCCCCACTGCCTCCTGCCAGACT
3' ss Score
8.03
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
AACTTCCTGCGCTGTCAGAACAACAAAACCAACTACAACTTGGTATGCGAGACGCTGCAGTTCCTGGACATCATGTGCGGCAGCACCACGGGCGGCCTGGGGCTGCTGGGGCTCTACATCAATGAGGACAACGTGGGCCTCGTCATCCAGACCTTGGAGACCCTCACTGAGTACTGCCAGGGCCCCTGCCATGAGAACCAG
Seq A exon
ACTTGCATTGTGACTCACGAGTCCAATGGCATAGACATCATCACCGCACTGATCCTCAATGACATCAGCCCCCTGTGCAAGTACCGCATGGATCTGGTGCTGCAGCTCAAG
Seq C2 exon
GACAATGCCTCCAAGCTGCTCCTGGCTCTGATGGAGAGCCGGCATGACAGTGAAAATGCTGAGCGAATCCTCATCAGCCTGCGGCCCCAGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433-'50-51,'50-50,51-51
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.031
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=FE(55.0=100)
A:
PF084546=RIH_assoc=PD(18.3=59.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTGCGCTGTCAGAACAA
R:
ATTTTCACTGTCATGCCGGCT
Band lengths:
256-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)