BtaEX6096978 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7746927-7747909:+
Coord C1 exon
chr23:7746927-7747127
Coord A exon
chr23:7747273-7747383
Coord C2 exon
chr23:7747814-7747909
Length
111 bp
Sequences
Splice sites
3' ss Seq
CCACCCCTGCCTCCCACCAGACC
3' ss Score
9.17
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
AACTTCCTGCGCTGCCAGAACAATAAGACAAACTACAACCTGGTGTGCGAGACGCTGCAGTTCCTGGACATCATGTGCGGCAGCACTACGGGCGGCCTGGGGCTGCTGGGGCTCTACATCAATGAGGACAACGTGGGCCTCGTCATCCAGACCCTGGAGACCCTCACCGAGTACTGTCAGGGTCCCTGCCACGAGAACCAG
Seq A exon
ACCTGCATCGTGACGCACGAGTCCAACGGCATAGACATCATCACCGCGCTGATTCTCAATGACATCAGCCCCCTATGCAAGTACCGTATGGACCTGGTGCTGCAACTCAAG
Seq C2 exon
GACAATGCCTCCAAGCTGCTCCTGGCTCTGATGGAGAGCCGGCACGACAGTGAAAACGCCGAGCGCATCCTCATCAGCCTGCGGCCCCAGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245-'50-47,'50-46,51-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.031
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=FE(55.0=100)
A:
PF084546=RIH_assoc=PD(18.3=59.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGCTGCCAGAACAATAAGA
R:
CTCGGCGTTTTCACTGTCGT
Band lengths:
257-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]