GgaEX1030918 @ galGal3
Exon Skipping
Gene
ENSGALG00000003149 | ITPR3
Description
NA
Coordinates
chr26:4449067-4450124:-
Coord C1 exon
chr26:4449924-4450124
Coord A exon
chr26:4449432-4449542
Coord C2 exon
chr26:4449067-4449162
Length
111 bp
Sequences
Splice sites
3' ss Seq
ACATTGCCTTGCTCCCGTAGAGC
3' ss Score
9.63
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
AACTTCCTGCGGTGCCAAAACAACAAGACCAACTACAACCTGGTGTGTGAGACGCTGCAGTTCCTTGACATCATGTGTGGCAGCACCACGGGCGGGCTGGGGCTGCTGGGCCTCTACATCAATGAGTACAACGTGGCCCTCATCACGCAGACCCTGGAGACCCTGACCGAGTACTGCCAAGGGCCCTGCCATGAGAACCAG
Seq A exon
AGCTGCATCGTGACCCACGAGTCCAACGGGATCGACATCATCACAGCCCTCATCCTCAATGACATCAGCCCCCTCTGCAAGTACCGGATGGACCTGGTCCTGCAGCTGAAG
Seq C2 exon
GACAACGCCTCCAAACTCCTCTTGGCCCTCATGGAGAGCAGACACGACAGTGAGAACGCCGAGCGGATCCTCATCAGCCTCCGCCCACAGGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149-'40-43,'40-42,42-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=FE(54.5=100)
A:
PF084546=RIH_assoc=PD(18.2=59.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGCCAAAACAACAAGACC
R:
ACTGTCGTGTCTGCTCTCCAT
Band lengths:
243-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]