RnoEX0045401 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140512045-140516657:+
Coord C1 exon
chr4:140512045-140512245
Coord A exon
chr4:140514135-140514245
Coord C2 exon
chr4:140516562-140516657
Length
111 bp
Sequences
Splice sites
3' ss Seq
GTGTGCGCCTGTTTTCACAGAAC
3' ss Score
8.96
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
AATTTCCTTCGTTGCCAAAATAATAAGACCAACTACAACTTGGTGTGTGAGACACTGCAGTTTCTGGACTGTATCTGTGGGAGCACAACTGGAGGCCTTGGTCTTCTCGGACTGTACATAAATGAAAAGAATGTAGCTCTTATCAACCAAACCCTGGAGAGTCTGACTGAGTACTGTCAAGGGCCTTGCCATGAAAACCAG
Seq A exon
AACTGCATCGCCACCCACGAGTCCAATGGCATCGATATCATCACAGCCCTCATCCTTAACGATATCAACCCTCTGGGGAAGAAACGGATGGACCTGGTGTTAGAACTGAAG
Seq C2 exon
AACAATGCTTCAAAGCTACTCCTGGCCATCATGGAAAGCAGACACGATAGTGAAAATGCAGAGAGGATCCTGTACAACATGAGGCCCAAGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'76-80,'76-78,78-80
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=FE(55.0=100)
A:
PF084546=RIH_assoc=PD(18.3=59.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAGACACTGCAGTTTCTGG
R:
TGGGCCTCATGTTGTACAGGA
Band lengths:
244-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]