MmuEX6005997 @ mm10
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108481223-108485338:+
Coord C1 exon
chr6:108481223-108481423
Coord A exon
chr6:108482897-108483007
Coord C2 exon
chr6:108485243-108485338
Length
111 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGCTTGTCTATATAGAAC
3' ss Score
8.78
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
AATTTCCTTCGTTGCCAAAATAATAAGACCAACTACAATTTGGTGTGTGAGACACTGCAGTTTCTGGACTGTATTTGTGGGAGCACAACCGGAGGCCTTGGTCTTCTTGGACTGTACATAAATGAAAAGAATGTAGCACTTATCAACCAAACCCTGGAGAGTCTGACGGAGTACTGTCAAGGGCCTTGCCATGAGAACCAG
Seq A exon
AACTGCATCGCCACCCACGAGTCCAATGGCATCGATATCATCACAGCCCTCATCCTCAATGATATCAACCCTCTGGGAAAGAAGCGGATGGACCTGGTGTTAGAACTGAAG
Seq C2 exon
AACAATGCTTCGAAGCTGCTACTGGCCATCATGGAAAGCAGACACGATAGTGAAAATGCAGAGAGGATCCTGTACAACATGAGGCCCAAGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'114-94,'114-93,115-94
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=FE(55.0=100)
A:
PF084546=RIH_assoc=PD(18.3=59.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAGACACTGCAGTTTCTGG
R:
TGGGCCTCATGTTGTACAGGA
Band lengths:
244-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types