MmuEX6005997 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108431217-108435332:+
Coord C1 exon
chr6:108431217-108431417
Coord A exon
chr6:108432891-108433001
Coord C2 exon
chr6:108435237-108435332
Length
111 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGCTTGTCTATATAGAAC
3' ss Score
8.78
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
AATTTCCTTCGTTGCCAAAATAATAAGACCAACTACAATTTGGTGTGTGAGACACTGCAGTTTCTGGACTGTATTTGTGGGAGCACAACCGGAGGCCTTGGTCTTCTTGGACTGTACATAAATGAAAAGAATGTAGCACTTATCAACCAAACCCTGGAGAGTCTGACGGAGTACTGTCAAGGGCCTTGCCATGAGAACCAG
Seq A exon
AACTGCATCGCCACCCACGAGTCCAATGGCATCGATATCATCACAGCCCTCATCCTCAATGATATCAACCCTCTGGGAAAGAAGCGGATGGACCTGGTGTTAGAACTGAAG
Seq C2 exon
AACAATGCTTCGAAGCTGCTACTGGCCATCATGGAAAGCAGACACGATAGTGAAAATGCAGAGAGGATCCTGTACAACATGAGGCCCAAGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'54-58,'54-56,56-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=FE(55.0=100)
A:
PF084546=RIH_assoc=PD(18.3=59.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAGACACTGCAGTTTCTGG
R:
TGGGCCTCATGTTGTACAGGA
Band lengths:
244-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: