BtaEX0018594 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21682394-21687025:-
Coord C1 exon
chr22:21686825-21687025
Coord A exon
chr22:21684884-21684994
Coord C2 exon
chr22:21682394-21682489
Length
111 bp
Sequences
Splice sites
3' ss Seq
GCGTGTGCCTCTTTTCTCAGAAC
3' ss Score
8.84
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
AACTTCCTCCGTTGCCAAAACAACAAGACCAACTACAATTTGGTGTGCGAGACACTGCAGTTTCTGGACTGTATTTGTGGAAGCACCACCGGGGGTCTTGGTCTTCTGGGACTCTATATCAACGAAAAGAACGTGGCCCTCATCAACCAAACCCTGGAAAGTTTGACTGAATACTGTCAAGGACCTTGCCATGAGAATCAG
Seq A exon
AACTGCATAGCCACCCATGAATCCAATGGCATTGACATCATCACAGCCCTGATCCTCAATGACATCAACCCTCTGGGAAAGAAGAGGATGGACCTTGTGTTAGAACTGAAG
Seq C2 exon
AACAATGCGTCCAAGTTGCTCCTGGCCATCATGGAGAGCAGGCATGACAGTGAGAATGCTGAGCGGATCCTCTATAACATGAGGCCCAAGGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=FE(55.0=100)
A:
PF084546=RIH_assoc=PD(18.3=56.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCTCCGTTGCCAAAACA
R:
CTGTCATGCCTGCTCTCCATG
Band lengths:
250-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development