DreEX6050289 @ danRer10
Exon Skipping
Gene
ENSDARG00000007560 | sema3bl
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl [Source:ZFIN;Acc:ZDB-GENE-030131-2956]
Coordinates
chr8:26548658-26552159:+
Coord C1 exon
chr8:26548658-26548699
Coord A exon
chr8:26550570-26550795
Coord C2 exon
chr8:26552026-26552159
Length
226 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCTTTCTCTTCCAGCAA
3' ss Score
12.59
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
GTGCCCACTCCTATAACCTCCATGGACATATCTGTGAAGAGG
Seq A exon
CAAACTCTGTTTGTTGGATCACAGACAGCTGTTGTCCAGGTGCCGCTGCACCGCTGCAGTATGTACGGTAAAGCTTGTGCCGAGTGCTGTTTGGCTCGAGATCCGTATTGCGCCTGGGACGGACAAACCTGCACACGATACCTGCCAAACACCAAACGGCGCTACCGCAGACAGGACATCAAACATGCAAACCCAGCAGTGCAGTGCATGGACCAAAACCTCAGCG
Seq C2 exon
TGGAGGATGTGGATCTGAGTGAAGAACGGGTTGTTTACGGCACTGAGAACAACAGCACCTTCCTGGAGTGCGTCCCTCGGTCGCCGCAGGCCACTGTCACATGGCACATTCAGAGAGATGACTACTTAGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007560-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(2.8=100)
A:
PF0140314=Sema=PD(4.9=30.3),PF0143720=PSI=WD(100=69.7),PF0248011=Herpes_gE=PU(11.4=25.0)
C2:
PF0248011=Herpes_gE=FE(26.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCACTCCTATAACCTCCA
R:
TCCCCTAAGTAGTCATCTCTCTGA
Band lengths:
174-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]