RnoEX6054739 @ rn6
Exon Skipping
Gene
ENSRNOG00000018952 | Sema3g
Description
semaphorin 3G [Source:RGD Symbol;Acc:1306079]
Coordinates
chr16:7310276-7312237:+
Coord C1 exon
chr16:7310276-7310317
Coord A exon
chr16:7311629-7311863
Coord C2 exon
chr16:7312107-7312237
Length
235 bp
Sequences
Splice sites
3' ss Seq
CTTGCATTTCCTTCCCCCAGCAA
3' ss Score
8.33
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTACCAACACCCATCACTGAGATGGAGATCTCTGTCAAAAGG
Seq A exon
CAAACGCTGTATGTGGGCTCTCCACTGGGCGTGGCCCGGCTGCAGCTGCACCAGTGTGAGACTTATGGCAGTGCCTGCGCTGAGTGCTGCCTGGCCCGGGACCCATACTGTGCTTGGGACGGCACTTCCTGTGCCCGCTACCGCCCCAGCTCGGGCAAGCGCAGGTTCCGACGACAGGACATCCGACATGGCAATCCTGCTGTGCAGTGTCTGGGCCAGGGCCAGAGCCAAGACA
Seq C2 exon
AAGCCTCGGGACTGGTGACCAGAGTCTTTGGCACAGAGCACAACAGTACCTTCCTTGAGTGCCGGCCCAAGTCTCCCCAGGCTGCAGTGCGCTGGTTCTTACAAAGGCCAGGGGATAAGGGGGCTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018952-'18-17,'18-16,19-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.076 C2=0.023
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(2.9=100)
A:
PF0143720=PSI=WD(100=78.5)
C2:
PF0143720=PSI=PD(0.1=0.0),PF0004720=ig=PU(48.4=68.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCAACACCCATCACTGAGA
R:
CTGGTCAGCCCCCTTATCCC
Band lengths:
173-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]