GgaEX0006023 @ galGal4
Exon Skipping
Gene
ENSGALG00000004476 | SEMA3G
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:HGNC Symbol;Acc:HGNC:30400]
Coordinates
chr12:3119391-3120090:-
Coord C1 exon
chr12:3120049-3120090
Coord A exon
chr12:3119722-3119935
Coord C2 exon
chr12:3119391-3119530
Length
214 bp
Sequences
Splice sites
3' ss Seq
CGTATTGTGCCTTCCTCTAGCAA
3' ss Score
7.71
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GTGCCGGTGCCCATCACTCAGATGGAGATCTCTGTCAAGCGC
Seq A exon
CAAAAGCTTTATGTGGGCGCCAGCCTGGGGGTGGCCCAGGTGCGGCTGCACCAGTGCAAGAGCTACGGCACTGCCTGTGCTGAGTGCTGCCTGGCCAGGGACCCGTACTGTGCCTGGGATGGCACTGCCTGCACCCGCTACCAGCCCTCGGGCAAGCGCCGCCACGTCCGCCACACCAGCTCTGTGCACCAGTGCCTGGACCAGAACCTGACTG
Seq C2 exon
TGGATGACTTGGAGCATGTTGAAGAGAAGGTGCTGTATGGCATGGAGCACAACAGCACCTTCCTGGAGTGTGTGCCCCGCTCCCCGCAGGCCAGCGTGCAGTGGTTTGTGCAGAGACCCCCGGATGAGCAGAGGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004476_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.255
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(2.9=100)
A:
PF0143720=PSI=PU(96.4=75.0)
C2:
PF0143720=PSI=PD(1.8=2.1),PF0768612=V-set=PU(48.4=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGTGCCCATCACTCA
R:
CTCATCCCTCTGCTCATCCGG
Band lengths:
180-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]