MmuEX6040480 @ mm9
Exon Skipping
Gene
ENSMUSG00000021904 | Sema3g
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:MGI Symbol;Acc:MGI:3041242]
Coordinates
chr14:32037806-32039705:+
Coord C1 exon
chr14:32037806-32037847
Coord A exon
chr14:32039105-32039339
Coord C2 exon
chr14:32039572-32039705
Length
235 bp
Sequences
Splice sites
3' ss Seq
TGCTTGTGTTTCTTCCCCAGCAA
3' ss Score
8.64
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTGCCAACGCCCATCACTGAGATGGAGATCTCTGTCAAAAGG
Seq A exon
CAAACGCTGTATGTGGGCTCTCCACTGGGTGTGGCCCGGCTGCAGCTGCACCAGTGTGAGACTTACGGCAGTGCCTGTGCTGAGTGCTGCCTGGCCCGGGACCCATACTGTGCTTGGGATGGCACTGCCTGTGCCCGCTACCGCCCCAGCTCTGGCAAGCGCAGGTTCCGTCGGCAGGACATACGCCATGGCAACCCTGCTGTGCAGTGTCTGGGCCAGGGCCAGAGCCAAAACA
Seq C2 exon
AAGCAGCTTCGGGGCTCATGACCAGAGTCTTTGGCACAGAGCACAACAGCACCTTCCTTGAGTGCCTGCCCAAGTCTCCTCAGGCTGCAGTGCGCTGGTTCTTACAAAGGCCAGGGGATAAGGGGACTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021904-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.063 C2=0.067
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(2.9=100)
A:
PF0143720=PSI=PU(96.8=77.2)
C2:
PF0143720=PSI=PD(1.6=2.2),PF0004720=ig=PU(48.4=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACGCCCATCACTGAGAT
R:
CTGGTCAGTCCCCTTATCCCC
Band lengths:
173-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: