DreEX6050295 @ danRer10
Exon Skipping
Gene
ENSDARG00000011672 | sema3b
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [Source:ZFIN;Acc:ZDB-GENE-081105-78]
Coordinates
chr8:26576480-26588046:-
Coord C1 exon
chr8:26587889-26588046
Coord A exon
chr8:26586009-26586071
Coord C2 exon
chr8:26576480-26576599
Length
63 bp
Sequences
Splice sites
3' ss Seq
AACTCCTCTTTCTTTCTCAGATC
3' ss Score
10.81
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
ATCTTCAGCAGTTTAATGGCATTAAGCGGTTTGACTTGGAGCGTTCGTGTTCTTTCGGAGCTCTGCTATTGGACGAAGAGAGGGGGCGACTGTTTGTTGGAGCTCGAAACTTTCTGCTATCTCTGAGTCTCGACAACATCAGCAAACAGGAACAGAAG
Seq A exon
ATCTACTGGCCAGCGCCTGTCGACTGGAGAGAAGAGTGCAACTGGGCCGGGAAAGACATCAAT
Seq C2 exon
ACGGATTGCGTAAACTATGTGAAAGTGCTACACCACTATAATCGAACTCACCTATACGCCTGTGGTACGGGGGCTTTCCACCCCACCTGTGCTTATGTGGAGGTGGGACAGAAAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011672-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(7.7=64.2)
A:
PF0140314=Sema=FE(4.5=100)
C2:
PF0140314=Sema=FE(8.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTGTTTGTTGGAGCTCGA
R:
CCGTACCACAGGCGTATAGGT
Band lengths:
142-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]