RnoEX6037472 @ rn6
Exon Skipping
Gene
ENSRNOG00000016512 | Sema3b
Description
semaphorin 3B [Source:RGD Symbol;Acc:1310079]
Coordinates
chr8:116359360-116360256:-
Coord C1 exon
chr8:116360099-116360256
Coord A exon
chr8:116359863-116359925
Coord C2 exon
chr8:116359360-116359479
Length
63 bp
Sequences
Splice sites
3' ss Seq
CCTGTGTTCCCTCCCCACAGCTG
3' ss Score
13.08
5' ss Seq
GGTGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
AACTACAGGCCCAGCATGGCATCCGAACCTTCAGGCTGGAGCGGACCTGCTGTTATGAAGCCTTGCTGGTGGATGAGGAGCGGGGGCGCCTGTTTGTGGGTGCTGAGAACCACGTGGCTTCCCTCAGCCTGGACAACATCAGCAAGCGAGCCAAGAAG
Seq A exon
CTGGCCTGGCCCGCCCCTGTGGAATGGCGTGAAGAATGCAACTGGGCAGGGAAGGACATTGGT
Seq C2 exon
ACGGAGTGCATGAACTTCGTGAAGCTGTTGCATGCCTACAACCACACCCACCTGCTGGCCTGCGGCACAGGGGCCTTCCACCCCACCTGTGCATTTGTGGAGGTGGGCCACCGGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016512-'9-6,'9-5,11-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(7.7=64.2)
A:
PF0140314=Sema=FE(4.5=100)
C2:
PF0140314=Sema=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGCCTTGCTGGTGGATG
R:
GCATGCAACAGCTTCACGAAG
Band lengths:
139-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]