MmuEX6068658 @ mm10
Exon Skipping
Gene
ENSMUSG00000057969 | Sema3b
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [Source:MGI Symbol;Acc:MGI:107561]
Coordinates
chr9:107603297-107604200:-
Coord C1 exon
chr9:107604043-107604200
Coord A exon
chr9:107603807-107603869
Coord C2 exon
chr9:107603297-107603416
Length
63 bp
Sequences
Splice sites
3' ss Seq
CCTGTGTTCCCTCCCCATAGCTG
3' ss Score
11.88
5' ss Seq
GGTGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
AATTACAGGCCCGGCATGGTGTCCGAACCTTCAGGCTGGAGCGGACCTGCTGTTATGAAGCCTTGCTGGTGGATGAGGAGCGTGGACGCCTGTTTGTGGGTGCTGAGAACCACGTGGCTTCCCTCAGCCTGGACAACATCAGCAAGCGAGCCAAGAAG
Seq A exon
CTGGCCTGGCCCGCCCCCGTGGAATGGCGTGAAGAATGCAACTGGGCAGGGAAGGACATTGGT
Seq C2 exon
ACCGAGTGCATGAACTTCGTGAAGCTGCTGCACACCTACAACCACACCCACTTGCTGGCCTGTGGCACAGGGGCTTTCCACCCAACCTGTGCCTTTGTGGAGGTGGGCCACCGGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057969-'16-20,'16-17,18-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(36.6=64.2)
A:
PF0140314=Sema=FE(21.5=100)
C2:
PF0140314=Sema=FE(33.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGCCTTGCTGGTGGATG
R:
GCAGCTTCACGAAGTTCATGC
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types